-----------------------------------------------------------------------------
- Banjo                        Bayesian Network Inference with Java Objects -
- Release 2.2.0                                                 15 Apr 2008 -
- Licensed from Duke University                                             -
- Copyright (c) 2005-08 by Alexander J. Hartemink                           -
- All rights reserved                                                       -
-----------------------------------------------------------------------------
- Project:                                                               50.2
- User:                                                              lsand039
- Dataset:                                  50-vars-377-temporal-observations
- Notes:                                    static bayesian network inference
-----------------------------------------------------------------------------
- Settings file:                                                             
-----------------------------------------------------------------------------
- Input directory:                                 data/release2.0/runA/input
- Observations file:                                                   50.txt
- Observation count:                                                      377
- Number of variables:                                                     51
- Variables are in rows:                                                  yes
- Variable names:                                                      inFile
- Discretization policy:                                                   i7
- Exceptions to the discretization policy:                               none
-----------------------------------------------------------------------------
- Initial structure file:                                                    
- 'Must be present' edges file:                                              
- 'Must not be present' edges file:                                          
- Min. Markov lag:                                                          0
- Max. Markov lag:                                                          0
- Max. parent count:                                                        5
- Equivalent sample size for Dirichlet parameter prior:                   1.0
-----------------------------------------------------------------------------
- Searcher:                                                 SearcherSimAnneal
- Proposer:                                           ProposerRandomLocalMove
- Evaluator:                                        defaulted to EvaluatorBDe
- Decider:                                     defaulted to DeciderMetropolis
-----------------------------------------------------------------------------
- Pre-compute logGamma:                                                    no
- Cache:                                                           fastLevel1
- Cycle checking method:                                   Depth-first Search
-----------------------------------------------------------------------------
- Initial temperature:                                                  25000
- Cooling factor:                                                         0.7
- Reannealing temperature:                                                800
- Max. accepted networks before cooling:                                  250
- Max. proposed networks before cooling:                                25000
- Min. accepted networks before reannealing:                              250
-----------------------------------------------------------------------------
- Output directory:                               data/release2.0/runA/output
- Report file:                      50.2static.report.2016.09.01.16.25.39.txt
- Number of best networks tracked:                                          1
- Max. time:                                                            2.0 h
- Max. restarts:                                                        25000
- Min. networks before checking:                                          250
- Screen reporting interval:                                           10.0 m
- File reporting interval:                                             2.05 h
-----------------------------------------------------------------------------
- Compute influence scores:                                               yes
- Compute consensus graph:                                                yes
- Create consensus graph as HTML:                                         yes
- Create 'dot' output:                                                    yes
- Location of 'dot':  /usr/bin/dot /usr/bin/X11/dot /usr/share/man/man1/dot.1.gz
-----------------------------------------------------------------------------
- XML output directory:                           data/release2.0/runA/output
- XML Report file:                                                           
- XML settings to export:                                                    
- XML parser:                             org.apache.xerces.parsers.SAXParser
- Banjo XML format version:                                               1.0
-----------------------------------------------------------------------------
- Seed for starting search:                                     1472761538925
-----------------------------------------------------------------------------
- Number of threads:                                                        1
-----------------------------------------------------------------------------

Memory info before starting the search: Banjo is using 1 mb of memory
Prep. time used: 261.0 ms
Beginning to search: expect a status report every 10.0 m

Status:  Networks   34506500
         Time       10.0 m (8.3% of max. 2.0 h)
         Re-anneals 352 (1.4% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   68447500
         Time       20.0 m (16.6% of max. 2.0 h)
         Re-anneals 701 (2.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   103163000
         Time       30.0 m (25.0% of max. 2.0 h)
         Re-anneals 1064 (4.2% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   137847000
         Time       40.0 m (33.3% of max. 2.0 h)
         Re-anneals 1422 (5.6% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   171485750
         Time       50.0 m (41.6% of max. 2.0 h)
         Re-anneals 1770 (7.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   214990250
         Time       1.0 h (50.0% of max. 2.0 h)
         Re-anneals 2122 (8.4% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   270098500
         Time       1.17 h (58.3% of max. 2.0 h)
         Re-anneals 2711 (10.8% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   332158000
         Time       1.33 h (66.6% of max. 2.0 h)
         Re-anneals 3353 (13.4% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   393768000
         Time       1.5 h (75.0% of max. 2.0 h)
         Re-anneals 3988 (15.9% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   455949750
         Time       1.67 h (83.3% of max. 2.0 h)
         Re-anneals 4632 (18.5% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   517294500
         Time       1.83 h (91.6% of max. 2.0 h)
         Re-anneals 5265 (21.0% of max. 25000)
         Banjo is using 5 mb of memory

Status:  Networks   585159750
         Time       2.0 h (100.0% of max. 2.0 h)
         Re-anneals 5976 (23.9% of max. 25000)
         Banjo is using 5 mb of memory



-----------------------------------------------------------------------------
- Final report                                           Best network overall
-----------------------------------------------------------------------------


Network score: -8224.9075, first found at iteration 301764774
51
 0 2 9 16
 1 2 0 27
 2 2 28 46
 3 0
 4 2 1 12
 5 2 13 23
 6 2 13 39
 7 2 3 20
 8 2 0 27
 9 2 11 29
10 2 6 12
11 2 13 17
12 2 3 13
13 2 3 49
14 2 13 21
15 2 17 23
16 2 11 42
17 2 28 40
18 2 5 29
19 2 11 29
20 2 11 49
21 2 6 40
22 3 3 12 36
23 2 6 29
24 2 16 23
25 2 17 19
26 2 3 49
27 2 36 44
28 2 3 26
29 2 16 42
30 2 3 13
31 2 13 42
32 2 16 48
33 3 0 10 20
34 2 17 28
35 2 16 38
36 3 0 10 14
37 2 27 38
38 2 29 33
39 2 28 40
40 2 3 13
41 2 15 17
42 2 3 40
43 2 3 26
44 2 13 32
45 2 11 14
46 2 31 48
47 1 27
48 2 14 17
49 1 3
50 2 1 13


-----------------------------------------------------------------------------
- Search Statistics                                                          
-----------------------------------------------------------------------------

Statistics collected in searcher 'SearcherSimAnneal':
  Number of networks examined: 585159750
  Total time used: 2.0 h
  High score: -8224.9075, first found at iteration 301764774
  Number of re-anneals: 5976

Statistics collected in proposer 'ProposerRandomLocalMove':
  Additions -- proposed:    195045196
  Deletions -- proposed:    195068180
  Reversals -- proposed:    195046373

Statistics collected in cycle checker 'CycleCheckerCheckThenApply':
  Additions -- considered:  195045196,  acyclic:  139692418
  Deletions -- no cyclicity test necessary
  Reversals -- considered:  195046373,  acyclic:  129576382

Statistics collected in evaluator 'EvaluatorBDe':
  Scores computed:          214159296
  Scores (cache)            placed         fetched        
      with 0 parents:       51             22853948       
      with 1 parents:       2550           283564153      
      with 2 parents:       31046385       14978860       
      with 3 parents:       171879009      55622152       
      with 4 parents:       10526837       2628771        
      with 5 parents:       704464         108834         

Statistics collected in decider 'DeciderMetropolis':
  Additions -- considered:  139692418,  better score:  7754229,  other accepted:  5472817
  Deletions -- considered:  195068180,  better score:  5647293,  other accepted:  7579656
  Reversals -- considered:  129576382,  better score:  8779076,  other accepted:  4626010
  Average permissivity:     0.04

Memory info after completing the search: Banjo is using 5 mb of memory


Network score: -8224.9075, found by thread 1
51
 0 2 9 16
 1 2 0 27
 2 2 28 46
 3 0
 4 2 1 12
 5 2 13 23
 6 2 13 39
 7 2 3 20
 8 2 0 27
 9 2 11 29
10 2 6 12
11 2 13 17
12 2 3 13
13 2 3 49
14 2 13 21
15 2 17 23
16 2 11 42
17 2 28 40
18 2 5 29
19 2 11 29
20 2 11 49
21 2 6 40
22 3 3 12 36
23 2 6 29
24 2 16 23
25 2 17 19
26 2 3 49
27 2 36 44
28 2 3 26
29 2 16 42
30 2 3 13
31 2 13 42
32 2 16 48
33 3 0 10 20
34 2 17 28
35 2 16 38
36 3 0 10 14
37 2 27 38
38 2 29 33
39 2 28 40
40 2 3 13
41 2 15 17
42 2 3 40
43 2 3 26
44 2 13 32
45 2 11 14
46 2 31 48
47 1 27
48 2 14 17
49 1 3
50 2 1 13

-----------------------------------------------------------------------------
- Post-processing                                            Influence scores
-----------------------------------------------------------------------------

Influence score for  (16,0) ->   (0,0)   .3223
Influence score for   (9,0) ->   (0,0)   .3311
Influence score for  (27,0) ->   (1,0)   .0000
Influence score for   (0,0) ->   (1,0)   -.3838
Influence score for  (46,0) ->   (2,0)   .0000
Influence score for  (28,0) ->   (2,0)   .3026
Influence score for  (12,0) ->   (4,0)   -.1644
Influence score for   (1,0) ->   (4,0)   .0000
Influence score for  (23,0) ->   (5,0)   .3307
Influence score for  (13,0) ->   (5,0)   .0000
Influence score for  (39,0) ->   (6,0)   .6414
Influence score for  (13,0) ->   (6,0)   .0000
Influence score for  (20,0) ->   (7,0)   .0000
Influence score for   (3,0) ->   (7,0)   .0000
Influence score for  (27,0) ->   (8,0)   .0000
Influence score for   (0,0) ->   (8,0)   -.3834
Influence score for  (29,0) ->   (9,0)   .0000
Influence score for  (11,0) ->   (9,0)   .0000
Influence score for  (12,0) ->  (10,0)   .2070
Influence score for   (6,0) ->  (10,0)   .2200
Influence score for  (17,0) ->  (11,0)   .3307
Influence score for  (13,0) ->  (11,0)   .3307
Influence score for  (13,0) ->  (12,0)   .3491
Influence score for   (3,0) ->  (12,0)   .3307
Influence score for  (49,0) ->  (13,0)   .0000
Influence score for   (3,0) ->  (13,0)   .2046
Influence score for  (21,0) ->  (14,0)   .1644
Influence score for  (13,0) ->  (14,0)   .3251
Influence score for  (23,0) ->  (15,0)   .0000
Influence score for  (17,0) ->  (15,0)   .3251
Influence score for  (42,0) ->  (16,0)   .0000
Influence score for  (11,0) ->  (16,0)   .0000
Influence score for  (40,0) ->  (17,0)   .0000
Influence score for  (28,0) ->  (17,0)   .3307
Influence score for  (29,0) ->  (18,0)   .0000
Influence score for   (5,0) ->  (18,0)   .1563
Influence score for  (29,0) ->  (19,0)   .3144
Influence score for  (11,0) ->  (19,0)   .1644
Influence score for  (49,0) ->  (20,0)   .0000
Influence score for  (11,0) ->  (20,0)   .3164
Influence score for  (40,0) ->  (21,0)   .0000
Influence score for   (6,0) ->  (21,0)   .0444
Influence score for  (36,0) ->  (22,0)   .0871
Influence score for  (12,0) ->  (22,0)   .1084
Influence score for   (3,0) ->  (22,0)   .0000
Influence score for  (29,0) ->  (23,0)   .0000
Influence score for   (6,0) ->  (23,0)   .0000
Influence score for  (23,0) ->  (24,0)   -.3292
Influence score for  (16,0) ->  (24,0)   .0000
Influence score for  (19,0) ->  (25,0)   .3130
Influence score for  (17,0) ->  (25,0)   .3130
Influence score for  (49,0) ->  (26,0)   .0000
Influence score for   (3,0) ->  (26,0)   .1644
Influence score for  (44,0) ->  (27,0)   .0000
Influence score for  (36,0) ->  (27,0)   .0000
Influence score for  (26,0) ->  (28,0)   .1664
Influence score for   (3,0) ->  (28,0)   .4059
Influence score for  (42,0) ->  (29,0)   .0000
Influence score for  (16,0) ->  (29,0)   .0000
Influence score for  (13,0) ->  (30,0)   -.3291
Influence score for   (3,0) ->  (30,0)   .0551
Influence score for  (42,0) ->  (31,0)   .3307
Influence score for  (13,0) ->  (31,0)   .3307
Influence score for  (48,0) ->  (32,0)   .5592
Influence score for  (16,0) ->  (32,0)   .0000
Influence score for  (20,0) ->  (33,0)   .1660
Influence score for  (10,0) ->  (33,0)   .1654
Influence score for   (0,0) ->  (33,0)   -.0077
Influence score for  (28,0) ->  (34,0)   .1619
Influence score for  (17,0) ->  (34,0)   .3311
Influence score for  (38,0) ->  (35,0)   .0000
Influence score for  (16,0) ->  (35,0)   -.1328
Influence score for  (14,0) ->  (36,0)   -.2775
Influence score for  (10,0) ->  (36,0)   .0000
Influence score for   (0,0) ->  (36,0)   .0736
Influence score for  (38,0) ->  (37,0)   -.3331
Influence score for  (27,0) ->  (37,0)   .2475
Influence score for  (33,0) ->  (38,0)   -.0286
Influence score for  (29,0) ->  (38,0)   .2877
Influence score for  (40,0) ->  (39,0)   .0000
Influence score for  (28,0) ->  (39,0)   .3307
Influence score for  (13,0) ->  (40,0)   .0368
Influence score for   (3,0) ->  (40,0)   .3307
Influence score for  (17,0) ->  (41,0)   .3104
Influence score for  (15,0) ->  (41,0)   .0000
Influence score for  (40,0) ->  (42,0)   .3307
Influence score for   (3,0) ->  (42,0)   .3307
Influence score for  (26,0) ->  (43,0)   .0000
Influence score for   (3,0) ->  (43,0)   -.1667
Influence score for  (32,0) ->  (44,0)   .3999
Influence score for  (13,0) ->  (44,0)   .2084
Influence score for  (14,0) ->  (45,0)   .0000
Influence score for  (11,0) ->  (45,0)   .0733
Influence score for  (48,0) ->  (46,0)   .0000
Influence score for  (31,0) ->  (46,0)   .0000
Influence score for  (27,0) ->  (47,0)   .6554
Influence score for  (17,0) ->  (48,0)   .4002
Influence score for  (14,0) ->  (48,0)   .0000
Influence score for   (3,0) ->  (49,0)   .0000
Influence score for  (13,0) ->  (50,0)   -.3164
Influence score for   (1,0) ->  (50,0)   .0000

-----------------------------------------------------------------------------
- Post-processing                                  DOT graphics format output
-----------------------------------------------------------------------------

digraph abstract { 

label = "Banjo Version 2.2.0\nHigh scoring network, score: -8224.9075\nProject: 50.2\nUser: lsand039\nDataset: 50-vars-377-temporal-observations"; 
labeljust="l"; 

    0 [label="Alzheimer"];
    1 [label="GNG4"];
    2 [label="THBS1"];
    3 [label="SIX6"];
    4 [label="GRIK1"];
    5 [label="WWC1"];
    6 [label="KIR2DS3"];
    7 [label="CEACAM6"];
    8 [label="NDUFA7"];
    9 [label="TLR8"];
    10 [label="FAIM3"];
    11 [label="MDFIC"];
    12 [label="GH1"];
    13 [label="REG1B"];
    14 [label="NTRK1"];
    15 [label="PDZD3"];
    16 [label="EDN1"];
    17 [label="ERGIC3"];
    18 [label="S100A2"];
    19 [label="HS3ST1"];
    20 [label="OR12D3"];
    21 [label="BCL3"];
    22 [label="PTGER1"];
    23 [label="LBP"];
    24 [label="MAP3K13"];
    25 [label="LAG3"];
    26 [label="CAMP"];
    27 [label="MLLT1"];
    28 [label="DSG3"];
    29 [label="CYP2C18"];
    30 [label="LPHN2"];
    31 [label="TTC12"];
    32 [label="KANK2"];
    33 [label="KIR2DS5"];
    34 [label="PF4"];
    35 [label="MCF2L2"];
    36 [label="OSBPL1A"];
    37 [label="AP3B2"];
    38 [label="ABCA1"];
    39 [label="SGPL1"];
    40 [label="NTNG1"];
    41 [label="NFE2"];
    42 [label="CABP5"];
    43 [label="NOC2L"];
    44 [label="PTK7"];
    45 [label="CFTR"];
    46 [label="NPY6R"];
    47 [label="SHANK1"];
    48 [label="SNTB2"];
    49 [label="ST8SIA2"];
    50 [label="BMPR2"];

    9->0;
    16->0;
    0->1;
    27->1;
    28->2;
    46->2;
    1->4;
    12->4;
    13->5;
    23->5;
    13->6;
    39->6;
    3->7;
    20->7;
    0->8;
    27->8;
    11->9;
    29->9;
    6->10;
    12->10;
    13->11;
    17->11;
    3->12;
    13->12;
    3->13;
    49->13;
    13->14;
    21->14;
    17->15;
    23->15;
    11->16;
    42->16;
    28->17;
    40->17;
    5->18;
    29->18;
    11->19;
    29->19;
    11->20;
    49->20;
    6->21;
    40->21;
    3->22;
    12->22;
    36->22;
    6->23;
    29->23;
    16->24;
    23->24;
    17->25;
    19->25;
    3->26;
    49->26;
    36->27;
    44->27;
    3->28;
    26->28;
    16->29;
    42->29;
    3->30;
    13->30;
    13->31;
    42->31;
    16->32;
    48->32;
    0->33;
    10->33;
    20->33;
    17->34;
    28->34;
    16->35;
    38->35;
    0->36;
    10->36;
    14->36;
    27->37;
    38->37;
    29->38;
    33->38;
    28->39;
    40->39;
    3->40;
    13->40;
    15->41;
    17->41;
    3->42;
    40->42;
    3->43;
    26->43;
    13->44;
    32->44;
    11->45;
    14->45;
    31->46;
    48->46;
    27->47;
    14->48;
    17->48;
    3->49;
    1->50;
    13->50;
}

